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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_2667120_2670254_F

Intron Information:

Intron Rank:
132423
Intron Class:
major
Intron Phase:
Intron Coordinates:
2667120 - 2670254
Intron Length:
3135

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTTTG
5'SS Class:
major
3'SS Sequence:
TTTATTCTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTCCCTTTATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1
72.9
39.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
84.9
0.79
0.7
78
36.4
Minor 5ss
46
-0.4
2.8
63.9
41.4
Minor BPS
73.8
0.83
1.5
89.88
33.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021151
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041700
2666213 - 2671178
4966