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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_2670852_2671434_F

Intron Information:

Intron Rank:
132425
Intron Class:
major
Intron Phase:
Intron Coordinates:
2670852 - 2671434
Intron Length:
583

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTGATTTGCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
TTCTCTTTGATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.9
83.9
30.3
Major BPS
84
0.85
0.9
75
39.9
Major PPT
69.7
0.44
1
69.5
41.5
Minor 5ss
40.2
-1.1
3
49.9
46.4
Minor BPS
76.7
0.92
1.1
86.38
34

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021151
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047780
2670255 - 2671748
1494