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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_2703175_2704118_F

Intron Information:

Intron Rank:
133426
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
2703175 - 2704118
Intron Length:
944

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTATCTGTG
5'SS Class:
weak_major
3'SS Sequence:
CCTTTGCATGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAC
U12 Branch Point Sequence:
TTCACCCTGATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
54.5
0.11
1.2
54.5
42.6
Major BPS
81.3
0.78
0.8
83.4
26.1
Major PPT
75.3
0.57
0.9
69.4
35.9
Minor 5ss
51.9
0.06
2.9
71.6
40
Minor BPS
57.9
0.33
1.7
76.7
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021770
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021058
2701780 - 2704205
2426