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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_2709486_2710739_R

Intron Information:

Intron Rank:
131110
Intron Class:
major
Intron Phase:
Intron Coordinates:
2709486 - 2710739
Intron Length:
1254

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCTGT
5'SS Class:
strong_major
3'SS Sequence:
TCCTCCTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
ATTGTTCTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
1
71.4
41.2
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
80.2
0.68
0.7
72.8
32
Minor 5ss
55.9
0.2
2.5
73.6
43
Minor BPS
54.2
0.21
1.7
73.99
37.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017757
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039891
2709261 - 2711619
2359