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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_2715314_2720563_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
5UTR
Intron Coordinates:
2715314 - 2720563
Intron Length:
5250

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGC|GTGTGTATA
5'SS Class:
weak_major
3'SS Sequence:
ATGTCTACGGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTTTTTAAAC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60.2
0.24
1.3
66.7
40.4
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
64.3
0.32
1.1
59.8
41
Minor 5ss
40.9
-1
2.7
45.8
42.8
Minor BPS
76.4
0.81
1.2
82.98
29.8

Associated Gene:

Gene:
SAMD11
Ensembl Gene ID:
ENSAPLG00000009193
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033869
2714591 - 2820824
106234