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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_2749866_2756082_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2749866 - 2756082
Intron Length:
6217

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGAGC
5'SS Class:
strong_major
3'SS Sequence:
CGCCCTGTGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTGAT
U12 Branch Point Sequence:
CCTGCTGCAACT
Flanking Amino Acid:
MPSTKPISRQNRGRLAEKRT
Intron Amino Acid Position:
11

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.9
73
38.2
Major BPS
74.7
0.61
0.9
63.4
35.6
Major PPT
61.2
0.25
1.1
56.3
38.8
Minor 5ss
27.2
-2.6
3
33.9
41.8
Minor BPS
44.9
-0.3
2.2
62.98
47.6

Associated Gene:

Gene:
SAMD11
Ensembl Gene ID:
ENSAPLG00000009193
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009574
2749836 - 2820696
70861