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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_2756262_2763962_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2756262 - 2763962
Intron Length:
7701

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTTTCC
5'SS Class:
major
3'SS Sequence:
TGTTTGTTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTGAC
U12 Branch Point Sequence:
TGTTTGTTAACA
Flanking Amino Acid:
EDLHISIMKRRIHTHWDLNI
Intron Amino Acid Position:
70

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1.1
68.8
37
Major BPS
66.4
0.41
1
58.7
38.1
Major PPT
77.8
0.62
1
73.3
40.9
Minor 5ss
40.5
-1.1
2.9
54.3
42.8
Minor BPS
66.5
0.51
2
79.59
36.6

Associated Gene:

Gene:
SAMD11
Ensembl Gene ID:
ENSAPLG00000009193
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023514
2720564 - 2835700
115137
ENSAPLT00000022447
2720405 - 2821612
101208
ENSAPLT00000033869
2714591 - 2820824
106234
ENSAPLT00000021319
2720564 - 2820824
100261
ENSAPLT00000031120
2720405 - 2820824
100420
ENSAPLT00000009574
2749836 - 2820696
70861
ENSAPLT00000026499
2754531 - 2820824
66294