About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_2764014_2781018_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2764014 - 2781018
Intron Length:
17005

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCATTT
5'SS Class:
major
3'SS Sequence:
TGCTCTGTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTTAA
U12 Branch Point Sequence:
ATTTCCTTAACT
Flanking Amino Acid:
LNISFRETSCSRDNDLSTII
Intron Amino Acid Position:
87

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.49
1.2
72.7
39.6
Major BPS
69.7
0.49
1
59.9
38.5
Major PPT
78.3
0.64
0.9
72.4
37.7
Minor 5ss
48.3
-0.1
3.2
74
42.4
Minor BPS
95.5
1.51
0.6
102.8
20

Associated Gene:

Gene:
SAMD11
Ensembl Gene ID:
ENSAPLG00000009193
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021319
2720564 - 2820824
100261
ENSAPLT00000031120
2720405 - 2820824
100420
ENSAPLT00000009574
2749836 - 2820696
70861
ENSAPLT00000026499
2754531 - 2820824
66294
ENSAPLT00000023514
2720564 - 2835700
115137
ENSAPLT00000022447
2720405 - 2821612
101208
ENSAPLT00000033869
2714591 - 2820824
106234