Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_277401_277867_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

277401 - 277867

Intron Length:

467

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAA|GTGAGTATT

5'SS Class:

strong_major

3'SS Sequence:

TTTGATTTTGCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GTTTGAT

U12 Branch Point Sequence:

AAGGCCTTAATT

Flanking Amino Acid:

VDLPSEEADGIPYIPSNRKH

Intron Amino Acid Position:

212

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.5

0.84

0.8

89.7

22.3

Major BPS

78.6

0.71

1.2

71.4

45.1

Major PPT

86.3

0.82

0.8

80.8

36.4

Minor 5ss

37.9

-1.4

51.7

39.1

Minor BPS

0.68

1.4

75.39

41.6

Associated Gene:

Gene:

PRKCZ

Ensembl Gene ID:

ENSAPLG00000010027

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010479

249611 - 293056

43446

ENSAPLT00000040721

265744 - 292632

26889