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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_2780710_2781018_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2780710 - 2781018
Intron Length:
309

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TGCTCTGTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTTAA
U12 Branch Point Sequence:
ATTTCCTTAACT
Flanking Amino Acid:
IRVLSVFPSEIRDNDLSTII
Intron Amino Acid Position:
76

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
1
83.5
28.7
Major BPS
69.7
0.49
1
59.9
38.5
Major PPT
78.3
0.64
0.9
72.4
37.7
Minor 5ss
45.3
-0.5
2.8
64.3
39.9
Minor BPS
95.5
1.51
0.6
102.8
20

Associated Gene:

Gene:
SAMD11
Ensembl Gene ID:
ENSAPLG00000009193
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024193
2780483 - 2821612
41130