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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_2781144_2794404_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2781144 - 2794404
Intron Length:
13261

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGGGC
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTCTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
CTTATCTGATGC
Flanking Amino Acid:
NSIDVGLGAADEILGKRRVC
Intron Amino Acid Position:
129

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
73.9
36.8
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
75.9
0.58
0.7
69
31.5
Minor 5ss
29.6
-2.3
3.5
41.1
45.6
Minor BPS
44.1
-0.4
2
55.15
43.1

Associated Gene:

Gene:
SAMD11
Ensembl Gene ID:
ENSAPLG00000009193
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024193
2780483 - 2821612
41130
ENSAPLT00000042094
2720564 - 2835700
115137
ENSAPLT00000023514
2720564 - 2835700
115137
ENSAPLT00000033869
2714591 - 2820824
106234
ENSAPLT00000022447
2720405 - 2821612
101208
ENSAPLT00000031120
2720405 - 2820824
100420
ENSAPLT00000009574
2749836 - 2820696
70861
ENSAPLT00000026499
2754531 - 2820824
66294