About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_2781144_2799192_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2781144 - 2799192
Intron Length:
18049

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGGGC
5'SS Class:
strong_major
3'SS Sequence:
CTCTGCTCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAA
U12 Branch Point Sequence:
AAAGCCCAAATC
Flanking Amino Acid:
NSIDVGLGAAENSHTPLLED
Intron Amino Acid Position:
414

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
73.9
36.8
Major BPS
62
0.3
1
62.3
30.4
Major PPT
80.1
0.68
0.8
76.8
32
Minor 5ss
29.6
-2.3
3.5
41.1
45.6
Minor BPS
44.1
-0.4
2
51.5
39.5

Associated Gene:

Gene:
SAMD11
Ensembl Gene ID:
ENSAPLG00000009193
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021319
2720564 - 2820824
100261