Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_2794498_2799192_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2794498 - 2799192

Intron Length:

4695

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTAAGTGCT

5'SS Class:

strong_major

3'SS Sequence:

CTCTGCTCTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AAATAAA

U12 Branch Point Sequence:

AAAGCCCAAATC

Flanking Amino Acid:

SKKARSESPKENSHTPLLED

Intron Amino Acid Position:

160

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.9

0.87

0.9

78.8

35.5

Major BPS

0.3

62.3

30.4

Major PPT

80.1

0.68

0.8

76.8

Minor 5ss

34.9

-1.7

3.2

42.4

44.3

Minor BPS

44.1

-0.4

51.5

39.5

Associated Gene:

Gene:

SAMD11

Ensembl Gene ID:

ENSAPLG00000009193

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022447

2720405 - 2821612

101208

ENSAPLT00000031120

2720405 - 2820824

100420

ENSAPLT00000009574

2749836 - 2820696

70861

ENSAPLT00000026499

2754531 - 2820824

66294

ENSAPLT00000024193

2780483 - 2821612

41130

ENSAPLT00000042094

2720564 - 2835700

115137

ENSAPLT00000023514

2720564 - 2835700

115137

ENSAPLT00000033869

2714591 - 2820824

106234