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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_2799358_2803564_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2799358 - 2803564
Intron Length:
4207

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACGGGCA
5'SS Class:
major
3'SS Sequence:
TCCCTCTCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGCTGAT
U12 Branch Point Sequence:
CGCGGCTGATCC
Flanking Amino Acid:
ANSMAVPSHGDLLRARQEVA
Intron Amino Acid Position:
215

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
66.9
38.7
Major BPS
58.4
0.21
1.4
51.1
46.3
Major PPT
76.5
0.6
0.7
68.6
31.8
Minor 5ss
28.4
-2.5
3.6
38.8
46.4
Minor BPS
39.5
-0.8
2
43.17
44.3

Associated Gene:

Gene:
SAMD11
Ensembl Gene ID:
ENSAPLG00000009193
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022447
2720405 - 2821612
101208
ENSAPLT00000031120
2720405 - 2820824
100420
ENSAPLT00000021319
2720564 - 2820824
100261
ENSAPLT00000026499
2754531 - 2820824
66294
ENSAPLT00000009574
2749836 - 2820696
70861
ENSAPLT00000024193
2780483 - 2821612
41130
ENSAPLT00000042094
2720564 - 2835700
115137
ENSAPLT00000023514
2720564 - 2835700
115137
ENSAPLT00000033869
2714591 - 2820824
106234