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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_280004_281294_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
280004 - 281294
Intron Length:
1291

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAAGGC
5'SS Class:
major
3'SS Sequence:
TATTCTATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
GATTGTTCAATT
Flanking Amino Acid:
VKKELVHDDEDIDWVQTEKH
Intron Amino Acid Position:
293

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
66.6
37.7
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
84.7
0.78
0.8
82.2
33.7
Minor 5ss
30.1
-2.3
3.4
41.8
45
Minor BPS
50.4
0.09
1.9
69.99
41.3

Associated Gene:

Gene:
PRKCZ
Ensembl Gene ID:
ENSAPLG00000010027
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010479
249611 - 293056
43446
ENSAPLT00000040721
265744 - 292632
26889