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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_2818113_2820447_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2818113 - 2820447
Intron Length:
2335

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAGCA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCCCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAC
U12 Branch Point Sequence:
CCTGCGTTCACT
Flanking Amino Acid:
LGPALKIRSQVAKRVGRVLY
Intron Amino Acid Position:
645

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
68.7
36.4
Major BPS
77.3
0.68
1
79.3
29.4
Major PPT
86.6
0.82
0.6
81.5
30.5
Minor 5ss
29.3
-2.4
3.5
39
46.3
Minor BPS
46.3
-0.2
2.5
66.67
50

Associated Gene:

Gene:
SAMD11
Ensembl Gene ID:
ENSAPLG00000009193
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021319
2720564 - 2820824
100261
ENSAPLT00000031120
2720405 - 2820824
100420
ENSAPLT00000009574
2749836 - 2820696
70861
ENSAPLT00000026499
2754531 - 2820824
66294
ENSAPLT00000024193
2780483 - 2821612
41130
ENSAPLT00000022447
2720405 - 2821612
101208
ENSAPLT00000033869
2714591 - 2820824
106234