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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_2837569_2838592_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2837569 - 2838592
Intron Length:
1024

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGTAT
5'SS Class:
strong_major
3'SS Sequence:
CCTTTGGTCTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TCTCACTTTATC
Flanking Amino Acid:
PELVLPTIIQPAAAGSSQAV
Intron Amino Acid Position:
610

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.7
0.98
0.8
84.7
28.2
Major BPS
85
0.87
0.8
85.6
23
Major PPT
74.8
0.56
0.9
71.9
38
Minor 5ss
38.4
-1.3
3.4
55
49.2
Minor BPS
52
0.04
1.8
65.11
40.5

Associated Gene:

Gene:
NOC2L
Ensembl Gene ID:
ENSAPLG00000008755
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018541
2837011 - 2857128
20118