About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_2848364_2850512_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2848364 - 2850512
Intron Length:
2149

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTGCC
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
CCATTTTCAAGT
Flanking Amino Acid:
LRSAMTIKKKENFQSVYNWQ
Intron Amino Acid Position:
416

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
1
77.2
32.8
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
92.3
0.95
0.6
88.4
21.3
Minor 5ss
32.6
-2
3.4
44.1
43.8
Minor BPS
47.1
-0.1
1.8
59.65
44.4

Associated Gene:

Gene:
NOC2L
Ensembl Gene ID:
ENSAPLG00000008755
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018541
2837011 - 2857128
20118
ENSAPLT00000009135
2823937 - 2857128
33192
ENSAPLT00000040219
2823735 - 2857128
33394