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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_2850702_2851978_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2850702 - 2851978
Intron Length:
1277

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGCTG
5'SS Class:
strong_major
3'SS Sequence:
CTTTCCCCAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
CTTTCCCCAACA
Flanking Amino Acid:
FPKQCRILLKQMYISFVKNS
Intron Amino Acid Position:
353

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
73.4
43.3
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
75.4
0.57
0.8
70.4
29.1
Minor 5ss
34.4
-1.8
3.4
46.7
48.6
Minor BPS
61.3
0.35
1.9
76.63
40.3

Associated Gene:

Gene:
NOC2L
Ensembl Gene ID:
ENSAPLG00000008755
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009135
2823937 - 2857128
33192