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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_2853691_2854158_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2853691 - 2854158
Intron Length:
468

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTTTTTAAAG
Flanking Amino Acid:
LLIKAPKNKQKLVLPSSSPI
Intron Amino Acid Position:
289

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.81
0.9
75.5
40.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
86.2
0.81
0.8
77.7
36.7
Minor 5ss
39.5
-1.2
3
50.7
39.9
Minor BPS
72.6
0.57
1.4
75.95
35.7

Associated Gene:

Gene:
NOC2L
Ensembl Gene ID:
ENSAPLG00000008755
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040219
2823735 - 2857128
33394
ENSAPLT00000018541
2837011 - 2857128
20118
ENSAPLT00000009135
2823937 - 2857128
33192