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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_2855659_2855973_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2855659 - 2855973
Intron Length:
315

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACCAGGT
5'SS Class:
major
3'SS Sequence:
AAAACTTTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TCTTCATAAAAA
Flanking Amino Acid:
RLHVPPDTLEEASDEDEDDE
Intron Amino Acid Position:
176

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.5
0.41
1.2
61
44.1
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
65.1
0.34
1
55.4
44.5
Minor 5ss
36.6
-1.5
3.7
56.7
47.4
Minor BPS
53.1
0.09
2
69.75
42.3

Associated Gene:

Gene:
NOC2L
Ensembl Gene ID:
ENSAPLG00000008755
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009135
2823937 - 2857128
33192
ENSAPLT00000040219
2823735 - 2857128
33394
ENSAPLT00000018541
2837011 - 2857128
20118