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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_2856146_2856673_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2856146 - 2856673
Intron Length:
528

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGCC
5'SS Class:
strong_major
3'SS Sequence:
TATCATCTACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
CACCCATTAATT
Flanking Amino Acid:
RERGRAQAAARKKGKASEHK
Intron Amino Acid Position:
118

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
71.9
33.4
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
71.3
0.48
1
63.5
42.2
Minor 5ss
25
-2.9
3.3
32.7
42.5
Minor BPS
56.2
0.27
1.7
67.77
43

Associated Gene:

Gene:
NOC2L
Ensembl Gene ID:
ENSAPLG00000008755
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040219
2823735 - 2857128
33394
ENSAPLT00000018541
2837011 - 2857128
20118
ENSAPLT00000009135
2823937 - 2857128
33192