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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_2856812_2856913_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2856812 - 2856913
Intron Length:
102

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCGCC
5'SS Class:
strong_major
3'SS Sequence:
TCCCGGCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
ACCCCTTTAACC
Flanking Amino Acid:
TGGSMAGSGRRSLAELSVDE
Intron Amino Acid Position:
72

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
69.3
35.8
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
64.7
0.33
0.9
57.1
33.4
Minor 5ss
32.2
-2
3.3
41.8
45.1
Minor BPS
66.4
0.49
1.3
65.76
40.1

Associated Gene:

Gene:
NOC2L
Ensembl Gene ID:
ENSAPLG00000008755
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040219
2823735 - 2857128
33394
ENSAPLT00000018541
2837011 - 2857128
20118
ENSAPLT00000009135
2823937 - 2857128
33192