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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_285764_291539_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
285764 - 291539
Intron Length:
5776

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAAAATA
5'SS Class:
major
3'SS Sequence:
TATTTTCTCTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
CTTTCCGCATTA
Flanking Amino Acid:
TFFRSIDWDLLEKKQATPPF
Intron Amino Acid Position:
526

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1
75.9
33
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
82.3
0.73
0.7
81.8
29.8
Minor 5ss
36.5
-1.5
3.1
45.8
43.6
Minor BPS
45.3
-0.3
2.3
63.02
43.9

Associated Gene:

Gene:
PRKCZ
Ensembl Gene ID:
ENSAPLG00000010027
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010479
249611 - 293056
43446
ENSAPLT00000040721
265744 - 292632
26889