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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_2864811_2865223_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2864811 - 2865223
Intron Length:
413

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAGCC
5'SS Class:
strong_major
3'SS Sequence:
TTTCCACTGCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAC
U12 Branch Point Sequence:
TTTTCCCCATTC
Flanking Amino Acid:
EIVVGEGNVQTLLPAASLLQ
Intron Amino Acid Position:
112

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
69.2
36.8
Major BPS
67.4
0.43
1.3
78.4
35.2
Major PPT
73.3
0.53
1
66.5
39.7
Minor 5ss
30.3
-2.3
3.5
42
45
Minor BPS
49.7
-0
2.1
71.53
39.8

Associated Gene:

Gene:
KLHL17
Ensembl Gene ID:
ENSAPLG00000008387
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008709
2864262 - 2870749
6488