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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_2866340_2866634_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2866340 - 2866634
Intron Length:
295

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGGGGC
5'SS Class:
major
3'SS Sequence:
CCTCTCCCTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTGAC
U12 Branch Point Sequence:
ACCCCACTGACG
Flanking Amino Acid:
VDSRRQHVPRLMKCVRLPLL
Intron Amino Acid Position:
225

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1
59.3
39.8
Major BPS
61.3
0.28
1
52.7
34.2
Major PPT
80.4
0.69
0.7
77.1
24.9
Minor 5ss
23.7
-3
3.3
23.4
37.6
Minor BPS
42.8
-0.7
1.9
44.48
41.1

Associated Gene:

Gene:
KLHL17
Ensembl Gene ID:
ENSAPLG00000008387
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008709
2864262 - 2870749
6488