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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_2867096_2867287_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2867096 - 2867287
Intron Length:
192

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGGACG
5'SS Class:
major
3'SS Sequence:
TTTCGTTATACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTTGTTTTATTT
Flanking Amino Acid:
AIGNKLYAVGGYDGTSDLAT
Intron Amino Acid Position:
344

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
67
44.2
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
81.7
0.71
0.9
76.6
36.7
Minor 5ss
32.1
-2
3
32.9
41.7
Minor BPS
59.9
0.39
1.6
78.46
39

Associated Gene:

Gene:
KLHL17
Ensembl Gene ID:
ENSAPLG00000008387
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008709
2864262 - 2870749
6488