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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_2867456_2867768_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2867456 - 2867768
Intron Length:
313

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGGAT
5'SS Class:
strong_major
3'SS Sequence:
TGCCCTGCTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCACAG
U12 Branch Point Sequence:
TGTCCCTGCCCT
Flanking Amino Acid:
GGYDGASCLNSAERYDPLTG
Intron Amino Acid Position:
400

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
73
38.2
Major BPS
39.5
-0.6
1.5
42.6
40.5
Major PPT
71.7
0.49
0.9
65
36.3
Minor 5ss
29.5
-2.3
3.8
45.4
49.7
Minor BPS
39.5
-0.7
3.6
71.32
45

Associated Gene:

Gene:
KLHL17
Ensembl Gene ID:
ENSAPLG00000008387
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008709
2864262 - 2870749
6488