Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_2876669_2877825_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2876669 - 2877825

Intron Length:

1157

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGA|GTGAGTACG

5'SS Class:

major

3'SS Sequence:

CTCCCCTCTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTTTCAG

U12 Branch Point Sequence:

TTTTCTTTTTTT

Flanking Amino Acid:

SFRRKPSLKKEQNGKKKLPS

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.5

0.51

65.1

40.7

Major BPS

58.3

0.21

1.7

71.4

45.1

Major PPT

78.7

0.65

0.7

72.6

25.6

Minor 5ss

31.9

-2.1

2.6

31.4

35.6

Minor BPS

46.2

-0.2

3.6

83.31

38.3

Associated Gene:

Gene:

PLEKHN1

Ensembl Gene ID:

ENSAPLG00000008187

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008500

2876221 - 2892895

16675

ENSAPLT00000008495

2874526 - 2893277

18752

ENSAPLT00000043567

2876221 - 2893277

17057