About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_2886516_2886757_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2886516 - 2886757
Intron Length:
242

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGACAC
5'SS Class:
major
3'SS Sequence:
TTGCTTTTCCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGCTGAG
U12 Branch Point Sequence:
TGCTTTTCCAAG
Flanking Amino Acid:
KVKLQHLPFQEQHDRLLVLY
Intron Amino Acid Position:
298

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
66
40.1
Major BPS
43.9
-0.3
1.6
36.8
44.4
Major PPT
71.6
0.49
1
71.1
38.8
Minor 5ss
30.9
-2.2
3.3
41.2
45.5
Minor BPS
41
-0.8
2
44.61
41.8

Associated Gene:

Gene:
PLEKHN1
Ensembl Gene ID:
ENSAPLG00000008187
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008500
2876221 - 2892895
16675
ENSAPLT00000008495
2874526 - 2893277
18752
ENSAPLT00000043567
2876221 - 2893277
17057