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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_2889680_2889984_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2889680 - 2889984
Intron Length:
305

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGCGTGTC
5'SS Class:
strong_major
3'SS Sequence:
TGCTGTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCGCAC
U12 Branch Point Sequence:
CGCACCTGCAGT
Flanking Amino Acid:
ENEKTSFLIEGRLINSIRVI
Intron Amino Acid Position:
348

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
75.9
33.9
Major BPS
48
-0.1
1.4
57
41.8
Major PPT
82
0.72
0.9
76.2
37.8
Minor 5ss
30.7
-2.2
3.4
43
44.6
Minor BPS
41.6
-0.5
2.1
53.88
47.1

Associated Gene:

Gene:
PLEKHN1
Ensembl Gene ID:
ENSAPLG00000008187
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043567
2876221 - 2893277
17057
ENSAPLT00000008500
2876221 - 2892895
16675
ENSAPLT00000008495
2874526 - 2893277
18752