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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_2890140_2890587_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2890140 - 2890587
Intron Length:
448

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGGC
5'SS Class:
strong_major
3'SS Sequence:
TCTCCCCCAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTGAC
U12 Branch Point Sequence:
TCTCCCCCAACA
Flanking Amino Acid:
SGSKQPHLGQLGGSGRGSLA
Intron Amino Acid Position:
400

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.3
0.93
0.8
73.3
36.4
Major BPS
56.5
0.16
1.1
48.6
36.6
Major PPT
71.7
0.49
0.8
66.3
28.4
Minor 5ss
30.8
-2.2
3.3
41.8
45
Minor BPS
54.4
0.14
1.9
70.3
41.4

Associated Gene:

Gene:
PLEKHN1
Ensembl Gene ID:
ENSAPLG00000008187
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008500
2876221 - 2892895
16675
ENSAPLT00000008495
2874526 - 2893277
18752
ENSAPLT00000043567
2876221 - 2893277
17057