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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_2890783_2891146_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2890783 - 2891146
Intron Length:
364

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCCTCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTGAA
U12 Branch Point Sequence:
TTCTCCTCACAG
Flanking Amino Acid:
LSPGYSQPLHCLPHTNWPST
Intron Amino Acid Position:
465

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
1
79.7
28.2
Major BPS
72
0.55
1.1
63.4
44.3
Major PPT
81.7
0.71
0.7
75.9
26.2
Minor 5ss
34.4
-1.8
3.3
44.6
43.6
Minor BPS
49.4
-0.1
2
60.81
46.6

Associated Gene:

Gene:
PLEKHN1
Ensembl Gene ID:
ENSAPLG00000008187
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043567
2876221 - 2893277
17057
ENSAPLT00000008500
2876221 - 2892895
16675
ENSAPLT00000008495
2874526 - 2893277
18752