Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_2891384_2892239_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2891384 - 2892239

Intron Length:

856

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGT|GTAAGGGGC

5'SS Class:

major

3'SS Sequence:

TGTTCTATTTAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTTCTAT

U12 Branch Point Sequence:

TTTGTTCTATTT

Flanking Amino Acid:

ASPSHPELSSVLQCPKTSQP

Intron Amino Acid Position:

544

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

66.4

0.39

1.2

58.7

40.3

Major BPS

56.1

0.15

1.5

58.5

47.9

Major PPT

0.52

1.1

76.6

36.5

Minor 5ss

31.6

-2.1

3.6

41.6

45.3

Minor BPS

47.6

-0.1

1.9

71.32

40.7

Associated Gene:

Gene:

PLEKHN1

Ensembl Gene ID:

ENSAPLG00000008187

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043567

2876221 - 2893277

17057

ENSAPLT00000008495

2874526 - 2893277

18752