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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_2891384_2892478_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2891384 - 2892478
Intron Length:
1095

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTAAGGGGC
5'SS Class:
major
3'SS Sequence:
TTGTCCTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
CATATTTTATTT
Flanking Amino Acid:
ASPSHPELSSVSSLLEEHLG
Intron Amino Acid Position:
604

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.4
0.39
1.2
58.7
40.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
85.2
0.79
0.8
77.2
37
Minor 5ss
31.6
-2.1
3.6
41.6
45.3
Minor BPS
49.9
0.07
1.6
64.72
40.6

Associated Gene:

Gene:
PLEKHN1
Ensembl Gene ID:
ENSAPLG00000008187
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008500
2876221 - 2892895
16675