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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_2898545_2900368_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2898545 - 2900368
Intron Length:
1824

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTGCGTGAG
5'SS Class:
major
3'SS Sequence:
TTTTTTTCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCACCAT
U12 Branch Point Sequence:
TTTTTTTTTTCT
Flanking Amino Acid:
DLQAPDAWKTMFLASFGTLS
Intron Amino Acid Position:
671

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.4
0.27
1.1
53.6
39.7
Major BPS
53
0.08
1.4
63
42.7
Major PPT
96
1.03
0.5
92.7
17.1
Minor 5ss
27.7
-2.6
3.3
35.8
42.2
Minor BPS
45.5
-0.2
3.6
82.93
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028056
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031814
2897256 - 2903171
5916