About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_2900486_2901275_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2900486 - 2901275
Intron Length:
790

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAGCAC
5'SS Class:
major
3'SS Sequence:
CTCGTCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAA
U12 Branch Point Sequence:
GCGTCCTGAAGC
Flanking Amino Acid:
QALDMALALRGIPEAPLPLT
Intron Amino Acid Position:
632

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
66.4
39.3
Major BPS
69.6
0.49
1
59.5
39
Major PPT
71.8
0.49
0.8
65.4
30.5
Minor 5ss
30.4
-2.2
3.4
41
45.6
Minor BPS
52.8
0.07
1.8
59.8
45.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028056
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031814
2897256 - 2903171
5916