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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_296369_297791_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
296369 - 297791
Intron Length:
1423

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TCTGTATCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAC
U12 Branch Point Sequence:
TCCTCTGTATCT
Flanking Amino Acid:
CPMCQIQFSGMMSQLDIDSH
Intron Amino Acid Position:
294

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
1
74.7
41.5
Major BPS
77.7
0.69
0.9
69.1
37.9
Major PPT
80
0.68
0.9
73.8
35.8
Minor 5ss
40.3
-1.1
3.1
54.9
42.3
Minor BPS
48.9
-0
2.2
70.73
46.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017661
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045227
296296 - 301090
4795