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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_3114200_3114344_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
3114200 - 3114344
Intron Length:
145

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
TGTTCTTGTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TTCATTCCAATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.1
1.09
0.7
87
30
Major BPS
80
0.75
1
78.6
31
Major PPT
81.1
0.7
0.9
76.8
37.3
Minor 5ss
35.9
-1.6
3
49.5
46.7
Minor BPS
45.9
-0.2
1.8
64.8
40.4

Associated Gene:

Gene:
C1orf159
Ensembl Gene ID:
ENSAPLG00000002131
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002297
3110370 - 3125157
14788