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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_3116518_3118428_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3116518 - 3118428
Intron Length:
1911

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATAGTGT
5'SS Class:
major
3'SS Sequence:
TGTTCTTATGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTGTTTTCAAGC
Flanking Amino Acid:
SCPVTNQCSPGCYRRWNEDG
Intron Amino Acid Position:
50

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.53
1
65.5
40.9
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
82
0.72
0.9
77.5
35.8
Minor 5ss
43.9
-0.7
3.3
64.5
46.9
Minor BPS
52.2
0.05
1.8
65.45
40.9

Associated Gene:

Gene:
C1orf159
Ensembl Gene ID:
ENSAPLG00000002131
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002297
3110370 - 3125157
14788