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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_3118534_3119443_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3118534 - 3119443
Intron Length:
910

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTCAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTATTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTACTTGAATT
Flanking Amino Acid:
SAHNLTDCRNAGIRGMNFQM
Intron Amino Acid Position:
85

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
70.2
35.9
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
93.1
0.97
0.7
88.7
26.7
Minor 5ss
29.2
-2.4
2.8
32.4
36.1
Minor BPS
70.1
0.71
1.4
85.62
34.4

Associated Gene:

Gene:
C1orf159
Ensembl Gene ID:
ENSAPLG00000002131
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002297
3110370 - 3125157
14788