About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_3119510_3120844_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3119510 - 3120844
Intron Length:
1335

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAG
U12 Branch Point Sequence:
CTTTCCTCTATT
Flanking Amino Acid:
STVTPFMQNIGGPEVAASLI
Intron Amino Acid Position:
107

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
75.7
34.4
Major BPS
49.9
-0
1.7
58.5
47.9
Major PPT
100
1.12
0.4
100
0
Minor 5ss
27.6
-2.6
3
34.8
41.6
Minor BPS
60.6
0.41
1.9
80.22
41.9

Associated Gene:

Gene:
C1orf159
Ensembl Gene ID:
ENSAPLG00000002131
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002297
3110370 - 3125157
14788