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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_3120980_3123026_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3120980 - 3123026
Intron Length:
2047

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAATGC
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATGAT
U12 Branch Point Sequence:
TCTAGATTAATG
Flanking Amino Acid:
LPNVFYRRNKASVLQPSETA
Intron Amino Acid Position:
152

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
69.3
36.6
Major BPS
76.8
0.67
1
66
40.9
Major PPT
90.4
0.91
0.6
88.5
21
Minor 5ss
37.6
-1.4
3.2
50.9
45.7
Minor BPS
47.9
-0.3
2.1
56.97
44.7

Associated Gene:

Gene:
C1orf159
Ensembl Gene ID:
ENSAPLG00000002131
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002297
3110370 - 3125157
14788