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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_3123392_3124302_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3123392 - 3124302
Intron Length:
911

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGAAT
5'SS Class:
strong_major
3'SS Sequence:
CCCACTGTTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATGAT
U12 Branch Point Sequence:
TGCTAATGATGT
Flanking Amino Acid:
ASMIPPPTSSVRKPRYVRRE
Intron Amino Acid Position:
171

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.8
83.8
29
Major BPS
76.8
0.67
1
66
40.9
Major PPT
71.9
0.49
0.9
67.9
37.5
Minor 5ss
28.5
-2.5
3.1
38.7
46.6
Minor BPS
38.6
-0.7
2.1
55.9
45.5

Associated Gene:

Gene:
C1orf159
Ensembl Gene ID:
ENSAPLG00000002131
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002297
3110370 - 3125157
14788