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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_31510_32121_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
31510 - 32121
Intron Length:
612

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTGCTTGTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
CAAAAATTAACT
Flanking Amino Acid:
KRRHRSHSAEGKHARVKEKE
Intron Amino Acid Position:
61

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.1
1.04
0.7
90.4
20.6
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
77.9
0.63
0.9
77.4
36.9
Minor 5ss
33.2
-1.9
3.4
48.7
47.5
Minor BPS
49.2
0.02
1.8
65.68
43.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011992
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012527
19675 - 32824
13150