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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_3211418_3212401_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3211418 - 3212401
Intron Length:
984

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTATGTATA
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GGCTGAC
U12 Branch Point Sequence:
CTGACCACGATC
Flanking Amino Acid:
NSARKATLWMKLGAEMASVP
Intron Amino Acid Position:
174

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
0.9
82.5
29.7
Major BPS
49.4
-0
1.3
42.8
41.8
Major PPT
89.3
0.88
0.6
84.8
22.8
Minor 5ss
47.1
-0.3
2.5
59.7
39.1
Minor BPS
43.8
-0.5
1.8
51.42
40

Associated Gene:

Gene:
TTLL10
Ensembl Gene ID:
ENSAPLG00000002326
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023251
3209323 - 3227605
18283
ENSAPLT00000002333
3207564 - 3227605
20042