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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_3217979_3218201_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3217979 - 3218201
Intron Length:
223

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAACAGT
5'SS Class:
major
3'SS Sequence:
CTTCTCTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTATAAC
U12 Branch Point Sequence:
GTCACTATAACA
Flanking Amino Acid:
ERNAFSELCKEEQIWICKPS
Intron Amino Acid Position:
374

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1
71.2
40.6
Major BPS
65.6
0.39
1.1
67.7
34.6
Major PPT
86
0.81
0.7
80.8
24.4
Minor 5ss
35
-1.7
3.1
48.8
47
Minor BPS
55.8
0.18
1.7
65.83
40.4

Associated Gene:

Gene:
TTLL10
Ensembl Gene ID:
ENSAPLG00000002326
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023251
3209323 - 3227605
18283
ENSAPLT00000002333
3207564 - 3227605
20042