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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_32247_32768_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
32247 - 32768
Intron Length:
522

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAACGAGA
5'SS Class:
major
3'SS Sequence:
TGTCATGTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
AGCTTATTAATT
Flanking Amino Acid:
PYRREDSMEDRGEEDDSLAI
Intron Amino Acid Position:
19

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1.2
69.6
42.7
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
72.7
0.51
0.9
69.7
41.2
Minor 5ss
37.2
-1.5
3.1
49.1
46.7
Minor BPS
59.7
0.38
1.6
71.8
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011992
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012527
19675 - 32824
13150