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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_3254877_3255401_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3254877 - 3255401
Intron Length:
525

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATGTATC
5'SS Class:
strong_major
3'SS Sequence:
TTTACATCCGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
ATTACACGAACT
Flanking Amino Acid:
GGNGNCQPWTNCSAVGKTTL
Intron Amino Acid Position:
170

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
0.9
80.7
31.7
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
72.1
0.5
0.8
67
34.1
Minor 5ss
48.1
-0.2
2.4
63.2
35.1
Minor BPS
48.3
-0
2.1
74.99
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002747
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042180
3252368 - 3258103
5736
ENSAPLT00000021214
3252368 - 3259117
6750
ENSAPLT00000002776
3252368 - 3259979
7612