Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_3255976_3256323_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3255976 - 3256323

Intron Length:

348

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGA|GTAAGTTGG

5'SS Class:

major

3'SS Sequence:

TTATCGTCCTTAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTTCAT

U12 Branch Point Sequence:

TCTCCCTTTATC

Flanking Amino Acid:

LCKSCTICKTTKGSVEVKKC

Intron Amino Acid Position:

114

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.2

0.57

1.1

63.4

43.8

Major BPS

91.2

1.02

0.7

91.7

20.2

Major PPT

71.9

0.49

0.9

70.2

36.2

Minor 5ss

40.9

-1

2.8

45.8

43.4

Minor BPS

64.5

0.44

1.6

72.1

39.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000002747

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000002776

3252368 - 3259979

7612

ENSAPLT00000042180

3252368 - 3258103

5736

ENSAPLT00000021214

3252368 - 3259117

6750